Fitting to a Cryo-EM Map using MD Simulation

FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation

AlphaFold2 and CryoEM: Revisiting CryoEM modeling in near-atomic resolution density maps - ScienceDirect

Adaptive Ensemble Refinement of Protein Structures in High Resolution Electron Microscopy Density Maps with Radical Augmented Molecular Dynamics Flexible Fitting

Interpretation of medium resolution cryoEM maps of multi-protein complexes - ScienceDirect

Advances in the molecular dynamics flexible fitting method for cryo-EM modeling.

Example of hybrid MD simulation fitting to high-resolution Cryo-EM map

Tutorial: Fit Biomolecules into Cryo-EM Maps using MD Simulation (GUI)

Fitting to a Cryo-EM Map using MD Simulation

Molecular Dynamics Flexible Fitting

Automated cryo-EM structure refinement using correlation-driven molecular dynamics

LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins

Cross-validation in cryo-EM–based structural modeling

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